The IMPaCT-Data’s work plan is detailed in the IMPaCT Strategic Plan, available at
the Carlos III Institute (ISCIII) website.
The work is distributed in 6 work packages (WP for its acronym in English - Work package). Details of deliverables
work packages are accessible in theproject deliverables.
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WP1. COORDINATION |
Project management.
Tasks:
- Coordination with the other two IMPaCT programs.
- Coordination with the health services of the Autonomous Communities.
- Coordination and internal management of the program.
- Communication and dissemination of program activities.
- Coordinate the participation of associated entities in program activities.
- Specific training.
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WP2. INFRASTRUCTURE |
Cloud computing infrastructure for data management and integration.
Tasks:
- Initial implementation and evaluation of a computer system for biomedical data associated with IMPaCT.
- Adoption and implementation of protocols for the use of software containers and workflows following the recommendations of ELIXIR, EOSC-Life and GA4GH.
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WP3. GENOMIC DATA |
Implementation of systems for the analysis, integration and interpretation of genomic data.
Tasks:
- Implementation of primary genomic information storage systems through Federated instances of EGA.
- Adaptation, installation and use of open source software for the analysis and integration of different data sources.
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WP4. CLINICAL DATA |
Implementation of systems for the analysis, integration and interpretation of clinical data including images.
Tasks:
- Adaptation, installation and use of open source software to extract variables from the HCE.
- Adaptation, installation and use of open source software tools for the monitoring and validation of medical image data extraction and treatment processes.
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WP5. INTEGRATION |
Design and initial implementation of interconnection systems between genomic data, medical imaging, and clinical data.
Tasks:
- Integration of genomic and radiomic data with structured medical data for secondary use.
- Implementation of mechanisms for the automatic identification of relevant genomic information, or medical imaging content that give anonymized responses in the beacon style.
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WP6. USE CASES |
Use cases for the application of the methodology and evaluation of its quality.
Tasks:
- Development of use cases aligned with IMPaCT.
- Assessment of security aspects in the handling of sensitive data, such as pseudonymization processes, accessibility, traceability and data privacy.